[GENERAL]
AmountOfChains=2
ChainLibrary=fattyAcidChains.xlsx
CAtomsFromName=\D*(\d+):\d+
DoubleBondsFromName=\D*\d+:(\d+)
BasePeakCutoff=0.1%
ChainCutoff=10%
SpectrumCoverage=10%
RetentionTimePostprocessing=true
ClassSpecificMS1Cutoff=0.01
IsobarSCExclusionRatio=0.1
IsobarSCFarExclusionRatio=0.3
IsobarRtDiff=1.5

[HEAD]
!FRAGMENTS
Name=Precursor		Formula=$PRECURSOR		Charge=1	MSLevel=2	mandatory=true
Name=NL_PChead_60	Formula=$PRECURSOR-C2O2H4	Charge=1	MSLevel=2	mandatory=other
Name=PChead_168		Formula=C4H11NO4P		Charge=1	MSLevel=2	mandatory=false
Name=PChead_224		Formula=C7H15O5NP		Charge=1	MSLevel=2	mandatory=false

!INTENSITIES
Equation=NL_PChead_60<Precursor*0.8	mandatory=true

[CHAINS]
!FRAGMENTS
Name=Carboxy		Formula=$CHAIN-H		Charge=1	MSLevel=2	mandatory=true
Name=NL_Carboxy		Formula=$PRECURSOR-$CHAIN	Charge=1	MSLevel=2	mandatory=false
Name=NL_Ketene		Formula=$PRECURSOR-$CHAIN+H2O	Charge=1	MSLevel=2	mandatory=false

[POSITION]
!INTENSITIES
Equation=Carboxy[2]*0.9>Carboxy[1]		mandatory=true
Equation=NL_Ketene[2]*0.9>NL_Ketene[1]		mandatory=false

