[GENERAL]
AmountOfChains=2
ChainLibrary=fattyAcidChains.xlsx
CAtomsFromName=\D*(\d+):\d+
DoubleBondsFromName=\D*\d+:(\d+)
BasePeakCutoff=0.01%
AlkenylChains=1
ChainCutoff=20%
RetentionTimePostprocessing=true
SingleChainIdentification=true
SpectrumCoverage=10%


[HEAD]
!FRAGMENTS
Name=Precursor			Formula=$PRECURSOR		Charge=1	MSLevel=2	mandatory=false
Name=NL_PChead_60		Formula=$PRECURSOR-C2O2H4	Charge=1	MSLevel=2	mandatory=true
Name=LPC_chain  		Formula=$PRECURSOR-C9H20O7P1N1	Charge=1	MSLevel=2	mandatory=other


!INTENSITIES
Equation=NL_PChead_60>Precursor			mandatory=true
Equation=LPC_chain<NL_PChead_60*0.05		mandatory=true


[CHAINS]
!FRAGMENTS
Name=Carboxy		Formula=$CHAIN-H			Charge=1	MSLevel=2	mandatory=true
Name=Alkenyl		Formula=$ALKENYLCHAIN-H			Charge=1	MSLevel=2	mandatory=false
Name=NL_Carboxy_head	Formula=NL_PChead_60-$CHAIN		Charge=1	MSLevel=2	mandatory=false
Name=NL_Ketene_head	Formula=NL_PChead_60-$CHAIN+H2O		Charge=1	MSLevel=2	mandatory=false

!INTENSITIES
Equation=Carboxy>NL_Ketene_head		mandatory=true
Equation=Carboxy>NL_Carboxy_head	mandatory=true
Equation=0.2*Carboxy>Alkenyl		mandatory=true


[POSITION]
!INTENSITIES
Equation=Carboxy[2]>0.1*NL_Ketene_head[2]+0*$BASEPEAK		mandatory=false
Equation=Carboxy[2]>0*Alkenyl[2]+0*$BASEPEAK			mandatory=true