[GENERAL]
AmountOfChains=2
ChainLibrary=fattyAcidChains.xlsx
CAtomsFromName=\D*(\d+):\d+
DoubleBondsFromName=\D*\d+:(\d+)
BasePeakCutoff=0.02%
ChainCutoff=50%
AlkenylChains=1
RetentionTimePostprocessing=true
SpectrumCoverage=5%

[HEAD]
!FRAGMENTS
Name=PChead_147			Formula=C2H5O4PNa		Charge=1	MSLevel=2	mandatory=true
Name=Plasmalogen_fragment_307	Formula=C21H39O			Charge=1	MSLevel=2	mandatory=false
Name=NL_trimethylamine_59	Formula=$PRECURSOR-C3H9N	Charge=1	MSLevel=2	mandatory=true
Name=NL_PChead_183		Formula=$PRECURSOR-C5H14NO4P	Charge=1	MSLevel=2	mandatory=false
Name=NL_PChead_205		Formula=$PRECURSOR-C5H13NO4PNa	Charge=1	MSLevel=2	mandatory=false
Name=Precursor			Formula=$PRECURSOR		Charge=1	MSLevel=2	mandatory=false

!INTENSITIES
Equation=NL_trimethylamine_59*1.1>Precursor			mandatory=true
Equation=NL_trimethylamine_59*0.6>Plasmalogen_fragment_307	mandatory=true
Equation=NL_trimethylamine_59*0.6>NL_PChead_183			mandatory=true
Equation=NL_trimethylamine_59*0.3>NL_PChead_205			mandatory=true
Equation=PChead_147*0.9>Plasmalogen_fragment_307		mandatory=true
Equation=PChead_147*0.7>NL_PChead_205				mandatory=true
Equation=PChead_147>0.05*$BASEPEAK				mandatory=true
