[GENERAL]
AmountOfChains=2
ChainLibrary=fattyAcidChains.xlsx
CAtomsFromName=\D*(\d+):\d+
DoubleBondsFromName=\D*\d+:(\d+)
BasePeakCutoff=1%
ChainCutoff=10%
AlkenylChains=1
SpectrumCoverage=5%
RetentionTimePostprocessing=true


[HEAD]
!FRAGMENTS
Name=PEhead_wrong	Formula=$PRECURSOR-P1O4C2N1H8	Charge=1	MSLevel=2	mandatory=other


[CHAINS]
!FRAGMENTS
Name=plasmalogen	Formula=$ALKENYLCHAIN+C2H7O3PN		Charge=1	MSLevel=2	mandatory=true
Name=plasmalogen-H3PO4	Formula=$ALKENYLCHAIN+C2H7O3PN-H3PO4	Charge=1	MSLevel=2	mandatory=false
Name=sn2		Formula=$CHAIN+C3H5O			Charge=1	MSLevel=2	mandatory=true

!INTENSITIES
Equation=sn2>0.8*PEhead_wrong		mandatory=true
Equation=sn2*1.8>plasmalogen		mandatory=true
Equation=sn2*1.1>plasmalogen-H3PO4	mandatory=true

[POSITION]
!INTENSITIES
Equation=sn2[2]>0*plasmalogen[2]+0*$BASEPEAK	mandatory=true
Equation=plasmalogen[1]>0*sn2[1]+0*$BASEPEAK	mandatory=true