[GENERAL]
AmountOfChains=2
ChainLibrary=fattyAcidChains.xlsx
CAtomsFromName=\D*(\d+):\d+
DoubleBondsFromName=\D*\d+:(\d+)
BasePeakCutoff=1%
AlkenylChains=1
ChainCutoff=20%
SpectrumCoverage=1%
singleChainIdentification=true
RetentionTimePostprocessing=true


[HEAD]
!FRAGMENTS
Name=PEhead_140			Formula=C2H7NO4P	Charge=1	MSLevel=2	mandatory=false
Name=PEhead_196			Formula=C5H11O5PN	Charge=1	MSLevel=2	mandatory=false
Name=plasmalogen_fragment_403	Formula=C21H40O5P	Charge=1	MSLevel=2	mandatory=false


[CHAINS]
!FRAGMENTS
Name=Carboxy		Formula=$CHAIN-H		Charge=1	MSLevel=2	mandatory=true
Name=Alkenyl		Formula=$ALKENYLCHAIN-H		Charge=1	MSLevel=2	mandatory=false
Name=NL_Carboxy		Formula=$PRECURSOR-$CHAIN	Charge=1	MSLevel=2	mandatory=false
Name=NL_Ketene		Formula=$PRECURSOR-$CHAIN+H2O	Charge=1	MSLevel=2	mandatory=true

!INTENSITIES
Equation=Carboxy>0.1*NL_Ketene				mandatory=true
Equation=Carboxy>0.1*NL_Carboxy				mandatory=true


[POSITION]
!INTENSITIES
Equation=Carboxy[2]>0.1*NL_Ketene[2]+0*$BASEPEAK		mandatory=true