#!/bin/sh
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mpirun -np 24 /home/cluster/Files/Installation/swarm/swarm -i "/netapp/BioInfo/multirun/seqs" -o "/netapp/BioInfo/multirun/out" -c "(export BLASTMAT='/master/software/bioinfo/ncbi-blast/matrices'; /master/software/bioinfo/bin/blastall -p blastx -a 2 -T T -M BLOSUM62 -e 10.000000 -b 250 -v 500 -K 100 -W 0 -g -G 0 -E 0 -F F -i <inputfile> -d /netapp/BioInfo/data/blast/nr/nr > <outputfile>)"
